CloneSet53

Bio/Blast/NCBIStandalone.py

Bio/Blast/NCBIStandalone.py

Bio/Blast/NCBIStandalone.py

Bio/Blast/NCBIStandalone.py

    def num_hits(self,line): 
        if line.find("1st pass")!=  -1: 
             x, = _get_cols(line,( -4, ),ncols = 11,expected = {2:"Hits"}) 
             self._params.num_hits = _safe_int(x) 
        else: 
             x, = _get_cols(line,( -1, ),ncols = 6,expected = {2:"Hits"}) 
             self._params.num_hits = _safe_int(x) 
        

    def num_sequences(self,line): 
        if line.find("1st pass")!=  -1: 
             x, = _get_cols(line,( -4, ),ncols = 9,expected = {2:"Sequences:"}) 
             self._params.num_sequences = _safe_int(x) 
        else: 
             x, = _get_cols(line,( -1, ),ncols = 4,expected = {2:"Sequences:"}) 
             self._params.num_sequences = _safe_int(x) 
        

    def num_extends(self,line): 
        if line.find("1st pass")!=  -1: 
             x, = _get_cols(line,( -4, ),ncols = 9,expected = {2:"extensions:"}) 
             self._params.num_extends = _safe_int(x) 
        else: 
             x, = _get_cols(line,( -1, ),ncols = 4,expected = {2:"extensions:"}) 
             self._params.num_extends = _safe_int(x) 
        

    def num_good_extends(self,line): 
        if line.find("1st pass")!=  -1: 
             x, = _get_cols(line,( -4, ),ncols = 10,expected = {3:"extensions:"}) 
             self._params.num_good_extends = _safe_int(x) 
        else: 
             x, = _get_cols(line,( -1, ),ncols = 5,expected = {3:"extensions:"}) 
             self._params.num_good_extends = _safe_int(x) 
        

def [[#variable77428120]](self,line):
  if line.find("1st pass")!= -1:
  
    x, = _get_cols(line,( -4, ),ncols = [[#variable5d745ec0]],expected = { [[#variable17f5d200]]: [[#variable77428100]]}) 
    self._params. [[#variable77428120]]= _safe_int(x) 
  else:
  
    x, = _get_cols(line,( -1, ),ncols = [[#variable77428160]],expected = { [[#variable17f5d200]]: [[#variable77428100]]}) 
    self._params. [[#variable77428120]]= _safe_int(x) 
  
 

num_good_extends 

num_extends 

num_sequences 

num_hits 

10 

9 

9 

11 

3 

2 

2 

2 

"extensions:" 

"extensions:" 

"Sequences:" 

"Hits" 

5 

4 

4 

6