CloneSet377


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Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
8230.977compound_stmt
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
18872
Bio/PopGen/GenePop/Controller.py
28882
Bio/PopGen/GenePop/Controller.py
Clone Instance
1
Line Count
8
Source Line
872
Source File
Bio/PopGen/GenePop/Controller.py

    def calc_ibd_diplo(self,fname,stat = "a",scale = "Log",min_dist = 0.00001):
                                                                             
        """Calculates isolation by distance statistics for diploid data.

           See _calc_ibd for parameter details.
           Note that each pop can only have a single individual and
           the individual name has to be the sample coordinates.
        """ 
        return self._calc_ibd(fname,5,stat,scale,min_dist) 

    #6.6


Clone Instance
2
Line Count
8
Source Line
882
Source File
Bio/PopGen/GenePop/Controller.py

    def calc_ibd_haplo(self,fname,stat = "a",scale = "Log",min_dist = 0.00001):
                                                                             
        """Calculates isolation by distance statistics for haploid data.

           See _calc_ibd for parameter details.
           Note that each pop can only have a single individual and
           the individual name has to be the sample coordinates.
        """ 
        return self._calc_ibd(fname,6,stat,scale,min_dist) 


Clone AbstractionParameter Count: 3Parameter Bindings

def [[#variable61857620]](self,fname,stat = "a",scale = "Log",min_dist = 0.00001):
   [[#variable61857080]]
  return self._calc_ibd(fname, [[#variable61857f00]],stat,scale,min_dist) 
  #6.6
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#61857620]]
calc_ibd_haplo 
12[[#61857620]]
calc_ibd_diplo 
21[[#61857080]]
"""Calculates isolation by distance statistics for haploid data.

           See _calc_ibd for parameter details.
           Note that each pop can only have a single individual and
           the individual name has to be the sample coordinates.
        """ 
22[[#61857080]]
"""Calculates isolation by distance statistics for diploid data.

           See _calc_ibd for parameter details.
           Note that each pop can only have a single individual and
           the individual name has to be the sample coordinates.
        """ 
31[[#61857f00]]
6 
32[[#61857f00]]
5