CloneSet137


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Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
5540.967compound_stmt
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
15205
Bio/SeqIO/_index.py
25211
Bio/SeqIO/_index.py
35217
Bio/SeqIO/_index.py
45223
Bio/SeqIO/_index.py
55229
Bio/SeqIO/_index.py
Clone Instance
1
Line Count
5
Source Line
205
Source File
Bio/SeqIO/_index.py

class FastaDict(_SequentialSeqFileDict): 
    "Indexed dictionary like access to a FASTA file." 

    def __init__(self,filename,alphabet,key_function):    
        _SequentialSeqFileDict.__init__(self,filename,alphabet,key_function,"fasta",">") 
    


Clone Instance
2
Line Count
5
Source Line
211
Source File
Bio/SeqIO/_index.py

class QualDict(_SequentialSeqFileDict): 
    "Indexed dictionary like access to a QUAL file." 

    def __init__(self,filename,alphabet,key_function):    
        _SequentialSeqFileDict.__init__(self,filename,alphabet,key_function,"qual",">") 
    


Clone Instance
3
Line Count
5
Source Line
217
Source File
Bio/SeqIO/_index.py

class PirDict(_SequentialSeqFileDict): 
    "Indexed dictionary like access to a PIR/NBRF file." 

    def __init__(self,filename,alphabet,key_function):    
        _SequentialSeqFileDict.__init__(self,filename,alphabet,key_function,"pir",">..;") 
    


Clone Instance
4
Line Count
5
Source Line
223
Source File
Bio/SeqIO/_index.py

class PhdDict(_SequentialSeqFileDict): 
    "Indexed dictionary like access to a PHD (PHRED) file." 

    def __init__(self,filename,alphabet,key_function):    
        _SequentialSeqFileDict.__init__(self,filename,alphabet,key_function,"phd","BEGIN_SEQUENCE") 
    


Clone Instance
5
Line Count
5
Source Line
229
Source File
Bio/SeqIO/_index.py

class AceDict(_SequentialSeqFileDict): 
    "Indexed dictionary like access to an ACE file." 

    def __init__(self,filename,alphabet,key_function):    
        _SequentialSeqFileDict.__init__(self,filename,alphabet,key_function,"ace","CO ") 



#######################################
# Fiddly indexers: GenBank, EMBL, ... #
#######################################
    


Clone AbstractionParameter Count: 4Parameter Bindings

class [[#variable753cee60]](_SequentialSeqFileDict):
   [[#variable753ce920]]

  def __init__(self,filename,alphabet,key_function):
  
    _SequentialSeqFileDict.__init__(self,filename,alphabet,key_function, [[#variable71b504c0]], [[#variable71b503c0]]) 
    #######################################
    # Fiddly indexers: GenBank, EMBL, ... #
    #######################################
  
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#753cee60]]
AceDict 
12[[#753cee60]]
PhdDict 
13[[#753cee60]]
PirDict 
14[[#753cee60]]
QualDict 
15[[#753cee60]]
FastaDict 
21[[#753ce920]]
"Indexed dictionary like access to an ACE file." 
22[[#753ce920]]
"Indexed dictionary like access to a PHD (PHRED) file." 
23[[#753ce920]]
"Indexed dictionary like access to a PIR/NBRF file." 
24[[#753ce920]]
"Indexed dictionary like access to a QUAL file." 
25[[#753ce920]]
"Indexed dictionary like access to a FASTA file." 
31[[#71b504c0]]
"ace" 
32[[#71b504c0]]
"phd" 
33[[#71b504c0]]
"pir" 
34[[#71b504c0]]
"qual" 
35[[#71b504c0]]
"fasta" 
41[[#71b503c0]]
"CO " 
42[[#71b503c0]]
"BEGIN_SEQUENCE" 
43[[#71b503c0]]
">..;" 
44[[#71b503c0]]
">" 
45[[#71b503c0]]
">"