CloneSet113


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Clone
Mass
Clones in
CloneSet
Parameter
Count
Clone
Similarity
Syntax Category
[Sequence Length]
14440.978compound_stmt
Clone AbstractionParameter Bindings
Clone Instance
(Click to see clone)
Line CountSource Line
Source File
11491
Bio/AlignAce/Parser.py
213752
Bio/Blast/NCBIStandalone.py
313766
Bio/Blast/NCBIStandalone.py
414166
Bio/Motif/Parsers/AlignAce.py
Clone Instance
1
Line Count
14
Source Line
91
Source File
Bio/AlignAce/Parser.py

class CompareAceParser(AbstractParser): 
     """Parses CompareAce output to usable form

    ### so far only in a very limited way
    """ 

     def __init__(self): 
          "__init__(self)" 
          self._scanner = CompareAceScanner( ) 
          self._consumer = CompareAceConsumer( ) 

     def parse(self,handle): 
         "parse(self, handle)" 
         self._scanner.feed(handle,self._consumer) 
         return self._consumer.data 
     


Clone Instance
2
Line Count
13
Source Line
752
Source File
Bio/Blast/NCBIStandalone.py

class BlastParser(AbstractParser): 
     """Parses BLAST data into a Record.Blast object.

    """ 

     def __init__(self): 
          "__init__(self)" 
          self._scanner = _Scanner( ) 
          self._consumer = _BlastConsumer( ) 

     def parse(self,handle): 
         "parse(self, handle)" 
         self._scanner.feed(handle,self._consumer) 
         return self._consumer.data 
     


Clone Instance
3
Line Count
13
Source Line
766
Source File
Bio/Blast/NCBIStandalone.py

class PSIBlastParser(AbstractParser): 
     """Parses BLAST data into a Record.PSIBlast object.

    """ 

     def __init__(self): 
          "__init__(self)" 
          self._scanner = _Scanner( ) 
          self._consumer = _PSIBlastConsumer( ) 

     def parse(self,handle): 
         "parse(self, handle)" 
         self._scanner.feed(handle,self._consumer) 
         return self._consumer.data 
     


Clone Instance
4
Line Count
14
Source Line
166
Source File
Bio/Motif/Parsers/AlignAce.py

class CompareAceParser(AbstractParser): 
     """Parses CompareAce output to usable form

    ### so far only in a very limited way
    """ 

     def __init__(self): 
          "__init__(self)" 
          self._scanner = CompareAceScanner( ) 
          self._consumer = CompareAceConsumer( ) 

     def parse(self,handle): 
         "parse(self, handle)" 
         self._scanner.feed(handle,self._consumer) 
         return self._consumer.data 
     


Clone AbstractionParameter Count: 4Parameter Bindings

class [[#variable78092dc0]](AbstractParser):
   [[#variable2f2c9ec0]]

  def __init__(self):
  
    "__init__(self)" 
    self._scanner = [[#variable2f2c9ce0]]( ) 
    self._consumer = [[#variable2f2c9c00]]( ) 

  def parse(self,handle):
  
    "parse(self, handle)" 
    self._scanner.feed(handle,self._consumer) 
    return self._consumer.data 
  
 

CloneAbstraction
Parameter Bindings
Parameter
Index
Clone
Instance
Parameter
Name
Value
11[[#78092dc0]]
CompareAceParser 
12[[#78092dc0]]
PSIBlastParser 
13[[#78092dc0]]
BlastParser 
14[[#78092dc0]]
CompareAceParser 
21[[#2f2c9ec0]]
"""Parses CompareAce output to usable form

    ### so far only in a very limited way
    """ 
22[[#2f2c9ec0]]
"""Parses BLAST data into a Record.PSIBlast object.

    """ 
23[[#2f2c9ec0]]
"""Parses BLAST data into a Record.Blast object.

    """ 
24[[#2f2c9ec0]]
"""Parses CompareAce output to usable form

    ### so far only in a very limited way
    """ 
31[[#2f2c9ce0]]
CompareAceScanner 
32[[#2f2c9ce0]]
_Scanner 
33[[#2f2c9ce0]]
_Scanner 
34[[#2f2c9ce0]]
CompareAceScanner 
41[[#2f2c9c00]]
CompareAceConsumer 
42[[#2f2c9c00]]
_PSIBlastConsumer 
43[[#2f2c9c00]]
_BlastConsumer 
44[[#2f2c9c00]]
CompareAceConsumer